In this tutorial, we will write a small script to run network inference with FlashWeave on a group of BIOM files. These files are derived from samples collected for the Sponge Microbiome Project (Moitinho-Silva et al., 2017). Each file contains a collection of samples collected from a single sponge order.

You can download the processed files from the Github repository: link to zip BIOM files. Unzip the files in a location of your choice.

In the script below, change the data_path C:/Users/Username/Documents/Workshop/sponges to the location where your files are stored. The script will read each of the files in the folder, so make sure only the BIOM files are in the folder.

using FlashWeave

end